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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term VKORC1:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000167397	VKORC1	0	0	16	ENSG00000167397	ENST00000300851	ENSP00000300851	vitamin K epoxide reductase complex, subunit 1 [Source:HGNC Symbol;Acc:23663]	16	31102163	31107301	-1	p11.2	31102163	31106081	VKORC1	VKORC1-004	HGNC Symbol	HGNC transcript name	8	55.01	protein_coding	protein_coding	ensembl_hava	havana	KNOWN	NOVEL	79001	23663	VKORC1		27514

MSeqDR Master Exome Data Set M1: 79 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	16	31102321	C	T	ENST00000300851	ENSG00000167397	31102163	31107301	ENSP00000300851	VKORC1	-1	-	-	-	3'_UTR	rs7294	0.34608	-	-	-	-	-	het	307
2	16	31102321	C	T	ENST00000300851	ENSG00000167397	31102163	31107301	ENSP00000300851	VKORC1	-1	-	-	-	3'_UTR	rs7294	0.34608	-	-	-	-	-	hom	129
3	16	31102321	C	T	ENST00000319788	ENSG00000167397	31102163	31107301	ENSP00000326135	VKORC1	-1	VKOR1_HUMAN	-	-	3'_UTR	rs7294	0.34608	-	-	-	-	-	het	307
4	16	31102321	C	T	ENST00000319788	ENSG00000167397	31102163	31107301	ENSP00000326135	VKORC1	-1	VKOR1_HUMAN	-	-	3'_UTR	rs7294	0.34608	-	-	-	-	-	hom	129
5	16	31102321	C	T	ENST00000354895	ENSG00000167397	31102163	31107301	ENSP00000346969	VKORC1	-1	VKOR1_HUMAN	-	-	3'_UTR	rs7294	0.34608	-	-	-	-	-	het	307
6	16	31102321	C	T	ENST00000354895	ENSG00000167397	31102163	31107301	ENSP00000346969	VKORC1	-1	VKOR1_HUMAN	-	-	3'_UTR	rs7294	0.34608	-	-	-	-	-	hom	129
7	16	31102321	C	T	ENST00000394975	ENSG00000167397	31102163	31107301	ENSP00000378426	VKORC1	-1	VKOR1_HUMAN	-	-	3'_UTR	rs7294	0.34608	-	-	-	-	-	het	307
8	16	31102321	C	T	ENST00000394975	ENSG00000167397	31102163	31107301	ENSP00000378426	VKORC1	-1	VKOR1_HUMAN	-	-	3'_UTR	rs7294	0.34608	-	-	-	-	-	hom	129
9	16	31102321	C	T	ENST00000420057	ENSG00000167397	31102163	31107301	ENSP00000437064	VKORC1	-1	-	-	-	3'_UTR	rs7294	0.34608	-	-	-	-	-	het	307
10	16	31102321	C	T	ENST00000420057	ENSG00000167397	31102163	31107301	ENSP00000437064	VKORC1	-1	-	-	-	3'_UTR	rs7294	0.34608	-	-	-	-	-	hom	129
11	16	31102334	A	G	ENST00000300851	ENSG00000167397	31102163	31107301	ENSP00000300851	VKORC1	-1	-	-	-	3'_UTR	rs80172895	-	-	-	-	-	-	hom	2
12	16	31102334	A	G	ENST00000300851	ENSG00000167397	31102163	31107301	ENSP00000300851	VKORC1	-1	-	-	-	3'_UTR	rs80172895	-	-	-	-	-	-	het	4
13	16	31102334	A	G	ENST00000319788	ENSG00000167397	31102163	31107301	ENSP00000326135	VKORC1	-1	VKOR1_HUMAN	-	-	3'_UTR	rs80172895	-	-	-	-	-	-	hom	2
14	16	31102334	A	G	ENST00000319788	ENSG00000167397	31102163	31107301	ENSP00000326135	VKORC1	-1	VKOR1_HUMAN	-	-	3'_UTR	rs80172895	-	-	-	-	-	-	het	4
15	16	31102334	A	G	ENST00000354895	ENSG00000167397	31102163	31107301	ENSP00000346969	VKORC1	-1	VKOR1_HUMAN	-	-	3'_UTR	rs80172895	-	-	-	-	-	-	hom	2
16	16	31102334	A	G	ENST00000354895	ENSG00000167397	31102163	31107301	ENSP00000346969	VKORC1	-1	VKOR1_HUMAN	-	-	3'_UTR	rs80172895	-	-	-	-	-	-	het	4
17	16	31102334	A	G	ENST00000394975	ENSG00000167397	31102163	31107301	ENSP00000378426	VKORC1	-1	VKOR1_HUMAN	-	-	3'_UTR	rs80172895	-	-	-	-	-	-	hom	2
18	16	31102334	A	G	ENST00000394975	ENSG00000167397	31102163	31107301	ENSP00000378426	VKORC1	-1	VKOR1_HUMAN	-	-	3'_UTR	rs80172895	-	-	-	-	-	-	het	4
19	16	31102334	A	G	ENST00000420057	ENSG00000167397	31102163	31107301	ENSP00000437064	VKORC1	-1	-	-	-	3'_UTR	rs80172895	-	-	-	-	-	-	hom	2
20	16	31102334	A	G	ENST00000420057	ENSG00000167397	31102163	31107301	ENSP00000437064	VKORC1	-1	-	-	-	3'_UTR	rs80172895	-	-	-	-	-	-	het	4

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

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Select a dataset from the above drop-down list,
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Transcripts and variants in the surrounding VKORC1 16:31102163..31107301 region Gbrowse